3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03323

Details:

PFam ID : PF03323

PFam Domain Description : Bacillus/Clostridium GerA spore germination protein

Number of Sequence in 50% Dataset : 178

Number of Sequence in Full Dataset : 601

Average sequence length: 428.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03323	C3DWY5_BACTS_1_48	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03323	A9U7K7_PHYPA_16_306	100

Sequence based PCA Plot of the family - PF03323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay