3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03321

Details:

PFam ID : PF03321

PFam Domain Description : GH3 auxin-responsive promoter

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 412

Average sequence length: 429.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03321	D7TTB8_VITVI_343_394	75.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03321	Q56Z33_ARATH_1_63	100

Sequence based PCA Plot of the family - PF03321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=53 Length=8
Motif2 Start=124 Length=8
Motif3 Start=78 Length=8
Motif4 Start=270 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay