3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03320

Details:

PFam ID : PF03320

PFam Domain Description : Bacterial fructose-1,6-bisphosphatase, glpX-encoded

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 420

Average sequence length: 304.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03320	Q14LA6_SPICI_1_52	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03320	Q1AVG1_RUBXD_4_320	100

Sequence based PCA Plot of the family - PF03320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=8
Motif2 Start=17 Length=8
Motif3 Start=6 Length=8
Motif4 Start=63 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay