3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03319

Details:

PFam ID : PF03319

PFam Domain Description : Ethanolamine utilisation protein EutN/carboxysome

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 255

Average sequence length: 81.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03319	B1ZR95_OPITP_1_108	4.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03319	B1ZR95_OPITP_1_108	100

Sequence based PCA Plot of the family - PF03319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=100 Length=8
Motif3 Start=1 Length=8
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay