3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03318

Details:

PFam ID : PF03318

PFam Domain Description : Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 110

Average sequence length: 197.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03318	B7QJ05_IXOSC_104_256	79.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03318	C4B693_CLOBO_25_272	100

Sequence based PCA Plot of the family - PF03318 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay