3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03311

Details:

PFam ID : PF03311

PFam Domain Description : Cornichon protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 187

Average sequence length: 113.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03311	C5LYC1_9ALVE_2_133	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03311	D8U5G5_VOLCA_1_127	99.4

Sequence based PCA Plot of the family - PF03311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8
Motif3 Start=59 Length=11
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay