3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03310

Details:

PFam ID : PF03310

PFam Domain Description : Caulimovirus DNA-binding protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 15

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03310	B2D1M8_9VIRU_1_124	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03310	Q2QDC0_9VIRU_4_40	100

Sequence based PCA Plot of the family - PF03310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=98 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay