3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03309

Details:

PFam ID : PF03309

PFam Domain Description : Type III pantothenate kinase

Number of Sequence in 50% Dataset : 235

Number of Sequence in Full Dataset : 923

Average sequence length: 197.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03309	F0GJ10_9BURK_1_101	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03309	B8BTF9_THAPS_30_260	100

Sequence based PCA Plot of the family - PF03309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=142 Length=8
Motif2 Start=208 Length=11
Motif3 Start=161 Length=8
Motif4 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay