3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03308

Details:

PFam ID : PF03308

PFam Domain Description : ArgK protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 712

Average sequence length: 255.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03308	B0ETN6_ENTDI_117_258	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03308	D7G5D9_ECTSI_10_123	100

Sequence based PCA Plot of the family - PF03308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=80 Length=8
Motif3 Start=131 Length=11
Motif4 Start=33 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay