3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03307

Details:

PFam ID : PF03307

PFam Domain Description : Adenovirus 15.3kD protein in E3 region

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 19

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03307	E3145_ADEB3_4_121	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03307	E3145_ADEB3_4_121	100

Sequence based PCA Plot of the family - PF03307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay