3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03306

Details:

PFam ID : PF03306

PFam Domain Description : Alpha-acetolactate decarboxylase

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 234

Average sequence length: 205.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03306	F0P368_STAPE_8_223	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03306	E7H2A3_9BURK_4_230	100

Sequence based PCA Plot of the family - PF03306 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=68 Length=8
Motif2 Start=40 Length=11
Motif3 Start=169 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay