3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03302

Details:

PFam ID : PF03302

PFam Domain Description : Giardia variant-specific surface protein

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 788

Average sequence length: 181.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03302	A8B2P0_GIAIC_103_512	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03302	A8BTV5_GIAIC_724_808	97.8

Sequence based PCA Plot of the family - PF03302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=392 Length=8
Motif2 Start=320 Length=8
Motif3 Start=174 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay