3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03301

Details:

PFam ID : PF03301

PFam Domain Description : Tryptophan 2,3-dioxygenase

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 463

Average sequence length: 168.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03301	E1TFV5_BURSG_42_311	50.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03301	B7QHC9_IXOSC_9_59	100

Sequence based PCA Plot of the family - PF03301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay