3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03299

Details:

PFam ID : PF03299

PFam Domain Description : Transcription factor AP-2

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 63

Average sequence length: 175.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03299	E6ZHU9_DICLA_108_234	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03299	E3NKT3_CAERE_34_242	100

Sequence based PCA Plot of the family - PF03299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=30 Length=8
Motif3 Start=174 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay