3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03291

Details:

PFam ID : PF03291

PFam Domain Description : mRNA capping enzyme

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 276

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03291	D4I5T8_ASF_597_739	72.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03291	Q231D4_TETTH_92_524	99.6

Sequence based PCA Plot of the family - PF03291 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=509 Length=8
Motif2 Start=456 Length=8
Motif3 Start=478 Length=14
Motif4 Start=780 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay