3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03290

Details:

PFam ID : PF03290

PFam Domain Description : Vaccinia virus I7 processing peptidase

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 15

Average sequence length: 398.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03290	Q80DZ7_COWPX_1_420	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03290	VG1L_AMEPV_5_454	100

Sequence based PCA Plot of the family - PF03290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=39 Length=8
Motif3 Start=328 Length=8
Motif4 Start=237 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay