3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03281

Details:

PFam ID : PF03281

PFam Domain Description : Mab-21 protein

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 196

Average sequence length: 241.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03281	C3YLM0_BRAFL_187_306	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03281	A7S297_NEMVE_52_230	98.4

Sequence based PCA Plot of the family - PF03281 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=264 Length=11
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay