3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03279

Details:

PFam ID : PF03279

PFam Domain Description : Bacterial lipid A biosynthesis acyltransferase

Number of Sequence in 50% Dataset : 395

Number of Sequence in Full Dataset : 1415

Average sequence length: 274.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03279	E6B4M6_ECOLX_1_77	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03279	A0YBM7_9GAMM_3_118	99.8

Sequence based PCA Plot of the family - PF03279 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=222 Length=8
Motif2 Start=56 Length=8
Motif3 Start=142 Length=8
Motif4 Start=297 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay