3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03275

Details:

PFam ID : PF03275

PFam Domain Description : UDP-galactopyranose mutase

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 438

Average sequence length: 200.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03275	A7C488_9GAMM_153_279	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03275	Q6KHM4_MYCMO_161_380	100

Sequence based PCA Plot of the family - PF03275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=135 Length=8
Motif2 Start=5 Length=8
Motif3 Start=167 Length=11
Motif4 Start=197 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay