3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03274

Details:

PFam ID : PF03274

PFam Domain Description : Foamy virus BEL 1/2 protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 14

Average sequence length: 199.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03274	E2GD59_9RETR_29_284	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03274	Q7SIS4_9RETR_1_222	100

Sequence based PCA Plot of the family - PF03274 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=179 Length=8
Motif2 Start=137 Length=8
Motif3 Start=158 Length=8
Motif4 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay