3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03272

Details:

PFam ID : PF03272

PFam Domain Description : Viral enhancin protein

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 182

Average sequence length: 253.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03272	E7M397_9BACL_1_117	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03272	B1KVA6_CLOBM_348_502	100

Sequence based PCA Plot of the family - PF03272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=140 Length=8
Motif3 Start=32 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay