3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03271

Details:

PFam ID : PF03271

PFam Domain Description : EB1-like C-terminal motif

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 174

Average sequence length: 41.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03271	C4V7Q8_NOSCE_191_230	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03271	D8LUY2_BLAHO_249_290	100

Sequence based PCA Plot of the family - PF03271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=33 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay