3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03269

Details:

PFam ID : PF03269

PFam Domain Description : Caenorhabditis protein of unknown function, DUF268

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 48

Average sequence length: 144.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03269	E1Z189_9BACE_120_231	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03269	O01852_CAEEL_184_346	100

Sequence based PCA Plot of the family - PF03269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay