3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03268

Details:

PFam ID : PF03268

PFam Domain Description : Caenorhabditis protein of unknown function, DUF267

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 30

Average sequence length: 314.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03268	E3LNY6_CAERE_32_392	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03268	E3LNY6_CAERE_32_392	100

Sequence based PCA Plot of the family - PF03268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=183 Length=8
Motif4 Start=314 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay