3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03266

Details:

PFam ID : PF03266

PFam Domain Description : NTPase

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 188

Average sequence length: 157.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03266	A8UJL7_9FLAO_2_160	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03266	D9R268_CLOSW_4_190	100

Sequence based PCA Plot of the family - PF03266 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=30
Motif2 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay