3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03264

Details:

PFam ID : PF03264

PFam Domain Description : NapC/NirT cytochrome c family, N-terminal region

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 476

Average sequence length: 155.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03264	A1S9P8_SHEAM_3_86	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03264	D4H3I1_DENA2_8_213	100

Sequence based PCA Plot of the family - PF03264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay