3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03263

Details:

PFam ID : PF03263

PFam Domain Description : Cucumovirus protein 2B

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 25

Average sequence length: 98.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03263	C0MNB4_9BROM_2_119	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03263	C0MNB4_9BROM_2_119	100

Sequence based PCA Plot of the family - PF03263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=106 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay