3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03262

Details:

PFam ID : PF03262

PFam Domain Description : Coronavirus 6B/7B protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 30

Average sequence length: 192.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03262	B7T069_9ALPC_1_85	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03262	D3XGK0_9ALPC_1_204	100

Sequence based PCA Plot of the family - PF03262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=31 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay