3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03261

Details:

PFam ID : PF03261

PFam Domain Description : Cyclin-dependent kinase 5 activator protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 47

Average sequence length: 184.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03261	B4KJK8_DROMO_76_396	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03261	C3ZR40_BRAFL_1_101	100

Sequence based PCA Plot of the family - PF03261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=290 Length=8
Motif4 Start=302 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay