3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03258

Details:

PFam ID : PF03258

PFam Domain Description : Baculovirus FP protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 35

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03258	C0SKL8_MYCPN_110_217	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03258	Q91I70_9ABAC_1_143	100

Sequence based PCA Plot of the family - PF03258 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=122 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay