3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03257

Details:

PFam ID : PF03257

PFam Domain Description : Mycoplasma adhesin P1

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 31

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03257	C0SKL8_MYCPN_110_217	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03257	E9JMP0_MYCGE_848_924	93.3

Sequence based PCA Plot of the family - PF03257 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay