3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03256

Details:

PFam ID : PF03256

PFam Domain Description : Anaphase-promoting complex, subunit 10 (APC10)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 243

Average sequence length: 166.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03256	E7KN56_YEASL_89_176	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03256	C5LHU9_9ALVE_24_238	100

Sequence based PCA Plot of the family - PF03256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=172 Length=11
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay