3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03255

Details:

PFam ID : PF03255

PFam Domain Description : Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 772

Average sequence length: 134.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03255	D1F5G2_BRUME_3_83	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03255	D1F5G2_BRUME_3_83	100

Sequence based PCA Plot of the family - PF03255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=67 Length=8
Motif2 Start=2 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay