3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03254

Details:

PFam ID : PF03254

PFam Domain Description : Xyloglucan fucosyltransferase

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 136

Average sequence length: 360.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03254	C5X841_SORBI_6_42	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03254	D2VCY0_NAEGR_87_442	100

Sequence based PCA Plot of the family - PF03254 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=8
Motif3 Start=54 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay