3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03253

Details:

PFam ID : PF03253

PFam Domain Description : Urea transporter

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 185

Average sequence length: 262.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03253	E2ALN3_9HYME_42_361	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03253	E9H175_DAPPU_50_368	100

Sequence based PCA Plot of the family - PF03253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=8 Length=8
Motif2 Start=235 Length=8
Motif3 Start=63 Length=11
Motif4 Start=287 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay