3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03252

Details:

PFam ID : PF03252

PFam Domain Description : Herpesvirus UL21

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 24

Average sequence length: 417.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03252	A2TIV1_9ALPH_1_551	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03252	A2TIV1_9ALPH_1_551	100

Sequence based PCA Plot of the family - PF03252 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay