3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03251

Details:

PFam ID : PF03251

PFam Domain Description : Tymovirus 45/70Kd protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 19

Average sequence length: 439.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03251	O91259_PHMV_1_495	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03251	O91259_PHMV_1_495	100

Sequence based PCA Plot of the family - PF03251 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=365 Length=8
Motif3 Start=66 Length=8
Motif4 Start=238 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay