3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03250

Details:

PFam ID : PF03250

PFam Domain Description : Tropomodulin

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 81

Average sequence length: 127.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03250	E3W8Q3_9RICK_2_205	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03250	C1BTR8_9MAXI_1_150	100

Sequence based PCA Plot of the family - PF03250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay