3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03249

Details:

PFam ID : PF03249

PFam Domain Description : Type specific antigen

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 51

Average sequence length: 284.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03249	E3W8Q3_9RICK_2_205	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03249	A9YE27_ORITS_17_122	100

Sequence based PCA Plot of the family - PF03249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay