3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03241

Details:

PFam ID : PF03241

PFam Domain Description : 4-hydroxyphenylacetate 3-hydroxylase C terminal

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 241

Average sequence length: 197.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03241	A9U7F1_PHYPA_320_416	72.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03241	F2R414_9ACTO_263_468	100

Sequence based PCA Plot of the family - PF03241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay