3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03239

Details:

PFam ID : PF03239

PFam Domain Description : Iron permease FTR1 family

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 791

Average sequence length: 219.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03239	C4U6Z1_YERAL_1_69	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03239	Q3Y9I9_CRYGA_153_328	99.8

Sequence based PCA Plot of the family - PF03239 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=239 Length=8
Motif3 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay