3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03237

Details:

PFam ID : PF03237

PFam Domain Description : Terminase-like family

Number of Sequence in 50% Dataset : 366

Number of Sequence in Full Dataset : 1033

Average sequence length: 354.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03237	Q4C9U7_CROWT_24_240	63.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03237	E7NR41_TREPH_64_460	90.5

Sequence based PCA Plot of the family - PF03237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay