3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03234

Details:

PFam ID : PF03234

PFam Domain Description : Cdc37 N terminal kinase binding

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 128

Average sequence length: 137.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03234	A4RT65_OSTLU_5_182	72

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03234	Q5KHW9_CRYNE_2_214	92.1

Sequence based PCA Plot of the family - PF03234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=17
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay