3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03233

Details:

PFam ID : PF03233

PFam Domain Description : Aphid transmission protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 13

Average sequence length: 145.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03233	Q88439_9VIRU_1_160	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03233	VAT_CERV_1_166	100

Sequence based PCA Plot of the family - PF03233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay