3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03232

Details:

PFam ID : PF03232

PFam Domain Description : Ubiquinone biosynthesis protein COQ7

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 321

Average sequence length: 162.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03232	D2UXJ9_NAEGR_1_194	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03232	D2UXJ9_NAEGR_1_194	100

Sequence based PCA Plot of the family - PF03232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=59 Length=8
Motif2 Start=7 Length=19
Motif3 Start=150 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay