3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03228

Details:

PFam ID : PF03228

PFam Domain Description : Adenoviral core protein VII

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 39

Average sequence length: 100.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03228	Q2TLD3_9ADEN_2_119	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03228	VCO7_ADECC_1_117	100

Sequence based PCA Plot of the family - PF03228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=17
Motif2 Start=37 Length=8
Motif3 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay