3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03226

Details:

PFam ID : PF03226

PFam Domain Description : Yippee putative zinc-binding protein

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 264

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03226	A5ADN0_VITVI_275_370	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03226	C4QVA6_PICPG_75_185	100

Sequence based PCA Plot of the family - PF03226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=72 Length=11
Motif4 Start=97 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay