3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03224

Details:

PFam ID : PF03224

PFam Domain Description : V-ATPase subunit H

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 186

Average sequence length: 277.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03224	Q0Q7R2_ARAGL_1_88	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03224	Q4QC61_LEIMA_9_352	98.3

Sequence based PCA Plot of the family - PF03224 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=245 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay