3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03223

Details:

PFam ID : PF03223

PFam Domain Description : V-ATPase subunit C

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 178

Average sequence length: 348.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03223	Q4SJ11_TETNG_4_192	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03223	D7G2Q6_ECTSI_6_429	100

Sequence based PCA Plot of the family - PF03223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=286 Length=8
Motif2 Start=331 Length=8
Motif3 Start=395 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay