3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03222

Details:

PFam ID : PF03222

PFam Domain Description : Tryptophan/tyrosine permease family

Number of Sequence in 50% Dataset : 123

Number of Sequence in Full Dataset : 622

Average sequence length: 362.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03222	A4NV36_HAEIF_1_78	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03222	D1ND98_HAEIF_1_107	100

Sequence based PCA Plot of the family - PF03222 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=11
Motif2 Start=13 Length=23
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay